Publications


Below is a list of publications using our services

doi:10.1002/tpg2.20141

Genetic diversity assessment of Georgia peanut cultivars developed during ninety years of breeding

Nino Brown, William D. Branch, Matthew Johnson, Jason Wallace

doi:10.1093/jxb/eraa480

Genome-wide analyses reveal footprints of divergent selection and popping-related traits in CIMMYT's maize inbred lines

Jing Li, Delin Li, Cristian Zavala Espinosa, Viridiana Trejo Pastor, Awais Rasheed, Natalia Palacios Rojas, Jiankang Wang, Amalio Santacruz Varela, Natália Carolina de Almeida Silva, Patrick S Schnable, Denise E Costich, Huihui Li

doi:10.1038/s41598-020-73393-6

Construction of a dense genetic map of the Malus fusca fire blight resistant accession MAL0045 using tunable genotyping-by-sequencing SNPs and microsatellites

Ofere Francis Emeriewen, Klaus Richter, Thomas Berner, Jens Keilwagen, Patrick S. Schnable, Mickael Malnoy, Andreas Peil

doi:10.1007/s00122-020-03568-2

Genome-wide association mapping reveals loci for shelf life and developmental rate of lettuce

Jinita Sthapit Kandel, Hui Peng, Ryan J. Hayes, Beiquan Mou, Ivan Simko

doi:10.1007/s10592-019-01212-1

The conservation genomics of the endangered distylous gypsophile Oreocarya crassipes (Boraginaceae)

James I. Cohen

doi:10.1111/mec.15169

Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS

Jing Li, Guo‐Bo Chen, Awais Rasheed, Delin Li, Kai Sonder, Cristian Zavala Espinosa, Jiankang Wang, Denise E. Costich, Patrick S. Schnable, Sarah J. Hearne, Huihui Li

doi:10.1111/pbi.13206

Identification of loci controlling adaptation in chinese soybean landraces via a combination of conventional and bioclimatic GWAS

Ying‐Hui Li, Delin Li, Yong‐Qing Jiao, James C. Schnable, Yan‐Fei Li, Hui‐Hui Li, Huai‐Zhu Chen, Hui‐Long Hong, Ting Zhang, Bin Liu, Zhang‐Xiong Liu, Qing‐Bo You, Yu Tian, Yong Guo, Rong‐Xia Guan, Li‐Juan Zhang, Ru‐Zhen Chang, Zhiwu Zhang, Jochen Reif, Xin‐An Zhou, Patrick S. Schnable, Li‐Juan Qiu
doi:10.1104/pp.18.00771

Development of decreased-gluten wheat enabled by determination of the genetic basis of lys3a barley

Charles P. Moehs, William J. Austill, Aaron Holm, Tao A.G. Large, Dayna Loeffler, Jessica Mullenberg, Patrick S. Schnable, Wayne Skinner, Jos van Boxtel, Liying Wu, Cate McGuirea

doi:10.2135/cropsci2017.10.0611

Genetic characterization of maximilian sunflower for the development of a locally adapted perennial grain oilseed

Sean R. Asselin, Anita L. Brûlé-Babela, Douglas J. Cattania

doi:10.1038/s41598

Genetic diversity, population structure, and botanical variety of 320 global peanut accessions revealed through tunable genotyping-by-sequencing

Zheng Zheng, Ziqi Sun, Yuanjin Fang, Feiyan Qi, Hua Liu, Lijuan Miao, Pei Du, Lei Shi, Wei Gao, Suoyi Han, Wenzhao Dong, Fengshou Tang, Feng Cheng, Haiyan Hu, Bingyan Huang, Xinyou Zhang

doi:10.1186/s12863-018-0669-9

Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li, Jianzhou Qu, Yahui Wang, Liguo Chang, Kunhui He, Dongwei Guo, Xinghua Zhang, Shutu Xu, Jiquan Xue

doi:10.1093/icesjms/fsy102

Genomic analysis reveals multiple mismatches between biological and management units in yellowfin tuna (Thunnus albacares)

Rachel B. Mullins, Niall J. McKeown, Warwick H. H. Sauer, Paul W. Shaw

doi:10.3389/fpls.2018.01068

Integration of genetic and cytogenetic maps and identification of sex chromosome in garden asparagus (Asparagus officinalis L.)

Roberto Moreno, Patricia Castro, Jan Vrána, Marie Kubaláková, Petr Cápal, Verónica García, Juan Gil, Teresa Millán, Jaroslav Doležel

doi:10.1038/s41598-018-28294-0

Genotype-Corrector: improved genotype calls for genetic mapping in F2 and RIL populations

Chenyong Miao, Jingping Fang, Delin Li, Pingping Liang, Xingtan Zhang, Jinliang Yang, James C. Schnable, Haibao Tang

doi:10.1101/354548

Development of reduced gluten wheat enabled by determination of the genetic basis of the lys3a low hordein barley mutant

Charles Paul Moehs, William J Austill, Aaron Holm, Tao A.G. Large, Dayna Loeffler, Jessica Mullenberg, Patrick S Schnable, Wayne Skinner, Jos van Boxtel, Liying Wu, Cate McGuire

doi:10.3389/fpls.2018.00849

Exploiting the genomic diversity of rice (Oryza Sativa L.): snp-typing in 11 early-backcross introgression-breeding populations

Jauhar Ali1, Umair M. Aslam, Rida Tariq, Varunseelan Murugaiyan, Patrick S. Schnable, Delin Li, Corinne M. Marfori-Nazarea, Jose E. Hernandez, Muhammad Arif, Jianlong Xu, Zhikang Li

doi:10.1534/g3.118.200242

Phenotypic data from inbred parents can improve genomic prediction in pearl millet hybrids

Zhikai Liang, Shashi K. Gupta, Cheng-Ting Yeh, Yang Zhang, Daniel W. Ngu, Ramesh Kumar, Hemant T. Patil, Kanulal D. Mungra, Dev Vart Yadav, Abhishek Rathore, Rakesh K. Srivastava, Rajeev Gupta, Jinliang Yang, Rajeev K. Varshney, Patrick S. Schnable, James C. Schnable

doi:10.1038/s41438-018-0022-5

Molecular markers reliably predict post-harvest deterioration of fresh-cut lettuce in modified atmosphere packaging

Ivan Simko, Ryan J. Hayes, Maria-Jose Truco, Richard W. Michelmore, Rudie Antonise, Mark Massoudi

doi:10.1038/s41598-017-15576-2

Detection of genomic loci associated with chromosomal recombination using high-density linkage mapping in Setaria

Guanqing Jia, Haigang Wang, Sha Tang, Hui Zhi, Sichen Liu, Qifen Wen, Zhijun Qiao, Xianmin Diao

doi:10.1093/nar/gkx853

tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci

Alina Ott, Sanzhen Liu, James C. Schnable, Cheng-Ting "Eddy" Yeh, Kai-Sin Wang, Patrick S. Schnable

doi:10.3389/fpls.2017.01275

Simultaneous Improvement and Genetic Dissection of Salt Tolerance of Rice (Oryza sativa L.) by Designed QTL Pyramiding

Yunlong Pang, Kai Chen, Xiaoqian Wang, Wensheng Wang, Jianlong Xu, Jauhar Ali, Zhikang Li

doi:10.1038/s41598-017-03528-9

Genetic Determinants of Crop Timing and Quality Traits in Two Interspecific Petunia Recombinant Inbred Line Populations

Yufang Guo, Wei-Kuang Lin, QiuXia Chen, Veronica A. Vallejo, Ryan M. Warner

doi:10.1038/s41598-017-04903-2

Genotyping-by-sequencing reveals three QTL for clubroot resistance to six pathotypes of Plasmodiophora brassicae in Brassica rapa

Fengqun Yu, Xingguo Zhang, Gary Peng, Kevin C. Falk, Stephen E. Strelkov, Bruce D. Gossen

doi:10.1111/1755-0998.12503

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

J. M. Yáñez, S. Naswa, M. E. López, L. Bassini, K. Correa, J. Gilbey, L. Bernatchez, A. Norris, R. Neira, J. P. Lhorente, P. S. Schnable, S. Newman, A. Mileham, N. Deeb, A. Di Genova, A. Maass

doi:10.1186/s13059-014-0573-1

ALLMAPS: robust scaffold ordering based on multiple maps

Haibao Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C Schnable, Patrick S Schnable, Eric Lyons, Jianguo Lu

doi:10.3835/plantgenome2014.07.0034

Detection, validation, and application of genotyping-by-sequencing based single nucleotide polymorphisms in upland cotton

M. Sariful Islama, Gregory N. Thyssena, Johnie N. Jenkinsb, David D. Fang

doi:10.1093/nar/gku173

Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila

Weili Cai, Chao Wang, Yeran Li, Changfu Yao, Lu Shen, Sanzhen Liu, Xiaomin Bao, Patrick S. Schnable, Jack Girton, Jørgen Johansen, Kristen M. Johansen

doi:10.1093/mp/ssu056

Histone lysine methyltransferase SDG8 is involved in brassinosteroid-regulated gene expression in Arabidopsis thaliana

Xiaolei Wang, Jiani Chen, Zhouli Xie, Sanzhen Liu, Trevor Nolan, Huaxun Ye, Mingcai Zhang, Hongqing Guo, Patrick S. Schnable, Zhaohu Li, Yanhai Yin

doi:10.1038/ncomms14573

RD26 mediates crosstalk between drought and brassinosteroid signalling pathways

Huaxun Ye, Sanzhen Liu, Buyun Tang, Jiani Chen, Zhouli Xie, Trevor M. Nolan, Hao Jiang, Hongqing Guo, Hung-Ying Lin, Lei Li, Yanqun Wang, Hongning Tong, Mingcai Zhang, Chengcai Chu, Zhaohu Li, Maneesha Aluru, Srinivas Aluru, Patrick S. Schnable, Yanhai Yin